Yes sir :)
- which python: /usr/bin/python
- which -a python: /usr/bin/python
- env python:
Python 3.4.3 (default, Mar 25 2015, 17:13:50)
[GCC 4.9.2 20150304 (prerelease)] on linux
I got your point, the default version of python on Archlinux is version
3. So I had to change it:
cd /usr/bin
ln -sf python2 python
To reverse it:
ln -sf python3 python
Thank you for your suggestion. However, it's a drastic solution to do
that, and I think it can cause many problems for linux distributions
which use python 3. If you have a better solution, I take it.
But thank you anyway :)
Le 14/06/2015 22:40, Gerald Monard a écrit :
> Hello,
>
> Can you output the results of the following commands?
> - which python
> - which -a python
> - env python
>
> and after adding "set -x" at line 2 of test_at_serial.sh (in
> $AMBERHOME/AmberTools/test):
> - make test
>
> Thanks,
>
> Gerald.
>
> On 06/14/2015 07:44 PM, Jean-Patrick Francoia wrote:
>> Hi,
>>
>> I'm trying to install amber from the AmberTools free package available
>> on the website. I downloaded it yesterday, so it should be up-to-date.
>>
>> The configure gnu and make install commands went smoothly. However, when
>> I try to run the tests with "make test", as mentionned in the
>> installation guide, I get the following exception from python:
>>
>> (cd AmberTools/test && make test)
>> make[1] : on entre dans le répertoire
>> « /home/djipey/SOFT/amber14/AmberTools/test »
>> ./test_at_serial.sh
>> Traceback (most recent call last):
>> File "<stdin>", line 18, in <module>
>> File
>> "/home/djipey/SOFT/amber14/lib/python2.7/site-packages/chemistry/__init__.py",
>> line 10, in <module>
>> from chemistry.structure import Structure
>> File
>> "/home/djipey/SOFT/amber14/lib/python2.7/site-packages/chemistry/structure.py",
>> line 36, in <module>
>> from chemistry.topologyobjects import (AtomList, ResidueList,
>> TrackedList,
>> File
>> "/home/djipey/SOFT/amber14/lib/python2.7/site-packages/chemistry/topologyobjects.py",
>> line 14, in <module>
>> from compat24 import all, property
>> File
>> "/home/djipey/SOFT/amber14/lib/python2.7/site-packages/compat24.py",
>> line 68, in <module>
>> if not hasattr(__builtins__.property, 'setter'):
>> AttributeError: 'dict' object has no attribute 'property'
>> Makefile:6 : la recette pour la cible « test » a échouée
>> make[1]: *** [test] Erreur 1
>> make[1] : on quitte le répertoire
>> « /home/djipey/SOFT/amber14/AmberTools/test »
>> Makefile:43 : la recette pour la cible « test.serial » a échouée
>> make: *** [test.serial] Erreur 2
>>
>> Sorry, my error messages are in french, but you can get the error
>> message from python. The problem seems to come from the module
>> compat24.py, which I assume handles the compatibility for python 2.4.
>>
>> I'm using Manjaro Linux (which is based on Arch Linux), 64 bits system,
>> and I have python 3.4 and python 2.7 installed.
>>
>> Do you have an idea about how to solve this issue ?
>>
>> Sincerely
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
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Received on Mon Jun 15 2015 - 02:00:02 PDT
