Re: [AMBER] cpptraj checkoverlap

From: Jason Swails <>
Date: Fri, 8 May 2015 12:28:26 -0400

On Fri, May 8, 2015 at 12:12 PM, Aronica, Pietro <> wrote:

> Hello,
> Did something happen to the checkoverlap command in cpptraj? Not only I
> cannot find it in the manual, but when doing "help checkoverlap" within
> cpptraj itself it gives the help text for the check command. Did the
> functionality of searching for close contacts between two masks get
> transferred to a different command? I can issue the command as I need it to
> be with an older version of ptraj, but cannot find the equivalent in
> cpptraj. What am I missing? My cpptraj says it's V15.00b.

​Look at the "check" and "checkstructure" commands in cpptraj, which
encapsulates what "checkoverlap" does (and adds more checks, I think). See
page 559 of the Amber15.pdf manual.


Jason M. Swails
Rutgers University
Postdoctoral Researcher
AMBER mailing list
Received on Fri May 08 2015 - 09:30:03 PDT
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