Hi Kenneth,
I guess I have indeed to do the same - installation of amber tools 15 from
scratch.
Did you completely delete from your computer amber tools 14
before the installation of 15?
Thank you,
Michael
*****************************
Michael Shokhen, PhD
Associate Professor
Department of Chemistry
Bar Ilan University,
Ramat Gan, 52900
Israel
email: michael.shokhen.gmail.com
email: shokhen.mail.biu.ac.il
On Mon, May 4, 2015 at 6:12 PM, Kenneth Huang <kennethneltharion.gmail.com>
wrote:
> Micheal,
>
> The immediate workaround is to download the new AmberTools directly from
> the site, then unpack it and compile it. I ran into the same problem
> (likely because I made modifications), but reinstalling it works just fine.
>
> Best,
>
> Kenneth
>
> On Mon, May 4, 2015 at 10:54 AM, Michael Shokhen <
> michael.shokhen.biu.ac.il>
> wrote:
>
> > Dear List members,
> >
> > I have received today email with
> > amber tools 15 upgrade.
> > I have already at my ubuntu linux workstation Amber tools 14,
> > so I used the upgrade variant.
> > Unfortunately I have faced the installation problem (see below a copy
> > from terminal).
> > I would appreciate your advise how to resolve it.
> >
> > Thank you,
> > Michael
> >
> > shokhen.shokhen-lnx:~$ cd $AMBERHOME
> > shokhen.shokhen-lnx:~/amber14$ ./update_amber --upgrade
> > You are about to perform a major upgrade. This is NOT reversible.
> >
> > Do you wish to continue? (y/N) y
> > Downloading updates for AmberTools 14
> > Downloading AmberTools 14/update.24 (1.59 KB)
> > Applying AmberTools 14/update.24
> > Downloading AmberTools 14/update.25 (8.85 KB)
> > Applying AmberTools 14/update.25
> > Downloading AmberTools 14/update.26 (2.17 KB)
> > Applying AmberTools 14/update.26
> > Downloading AmberTools 14/update.27 (2.31 KB)
> > Applying AmberTools 14/update.27
> >
> >
> > updater.py has found a patch to itself... I am quitting now so
> > future updates will apply with the fixed script.
> >
> > Run this script again to get all updates.
> >
> > shokhen.shokhen-lnx:~/amber14$ cd $AMBERHOME
> > shokhen.shokhen-lnx:~/amber14$ ./update_amber --upgrade
> > You are about to perform a major upgrade. This is NOT reversible.
> >
> > Do you wish to continue? (y/N) y
> > Downloading updates for Amber 14
> > Downloading Amber 14/update.11 (6.88 KB)
> > Applying Amber 14/update.11
> > If the upgrade attempt fails, or you have made any custom changes
> > to the AmberTools source code, please download the AmberTools15
> > tarball from http://ambermd.org/AmberTools15-get.html
> >
> > NOTE: This upgrade cannot be reversed!
> > Downloading upgrade.patch.bz2 (24.58 MB)
> > Downloading: [::::::::::::::::::::::::::::::::::::::::::::::::::] 100.0%
> > Done.
> > Attempting the upgrade. Please wait...
> > Upgrade patch failed. Upgrade not performed.
> > shokhen.shokhen-lnx:~/amber14$
> >
> > *****************************
> > Michael Shokhen, PhD
> > Associate Professor
> > Department of Chemistry
> > Bar Ilan University,
> > Ramat Gan, 52900
> > Israel
> > email: michael.shokhen.gmail.com
> > email: shokhen.mail.biu.ac.il
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Ask yourselves, all of you, what power would hell have if those imprisoned
> here could not dream of heaven?
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>
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Received on Mon May 04 2015 - 09:00:02 PDT
