Re: [AMBER] loading molecule in xleap and saving it in mol2 format

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From: jacob wick <jacobwick.la.gmail.com>
Date: Fri, 20 Mar 2015 20:39:50 +0530

I have loaded one pdb with standard residues and then deleted some of the
sugar bonds. Saving the modified file as mol2, this time also, without
changing the residues name I am getting the modified structure (visualizing
the structure using vmd). This file also has the partial charge column.
Is nucleic12.lib and loaded force fields like 14SB/bsc0 force fields are
capable of adding partial charges on modified residues also. Please suggest!
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Received on Fri Mar 20 2015 - 08:30:02 PDT