Dear amaber users,
In attempt to create a topology file for oxonium cation from pdb file by
following command, it is showing,
For atom[1]:O1, the best APS is not zero, bonds involved by this atom are
frozen
The command line is
antechamber -i eth.pdb -fi pdb -o eth.prepi -fo prepi -c bcc -nc 1 -at gaff
-pf y
It will be very helpful for helping me. Many Many thanks to all. Here i am
attaching also the pdb file which i created by xleap.
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Received on Mon Mar 16 2015 - 03:00:02 PDT
