Hello,
Parmed (parmed.py) could help you with the "PrintBonds" command.
Gerald.
On 01/03/2015 07:25 PM, Francesco Pietra wrote:
> Sorry for asking what will be common knowledge: where to check for bonds
> formed that were commanded to leap (similarly to what is shown in psf
> charmm files). I have both regular distances and too long distance for
> regular bonds (between enzyme backbone and active center), none detected by
> loading parm7/rst7 to vmd, while indicated on leap log.
> thanks
> francesco pietra
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Received on Sun Jan 04 2015 - 09:00:02 PST
