[AMBER] RMSD calculation of a homodimer

From: Ibrahim Said <saidibrahim569.gmail.com>
Date: Sun, 4 Jan 2015 18:21:23 +0200

Dear Amber users
I ran a Molecular Dynamics simulation for 10ns. My protein is a homodimer
composed of two subunits. The two subunits are with different residue
lengths (x-ray file). Please, can I find a hand to write ptraj.in script
for calculating the RMSD of the two subunits individually. My Amber is
version 12.

thank you in advance,

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Received on Sun Jan 04 2015 - 08:30:05 PST
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