Thank you all for the suggestions.
On Fri, Oct 24, 2014 at 6:49 PM, Jason Swails <jason.swails.gmail.com>
wrote:
> On Fri, Oct 24, 2014 at 8:46 AM, Asfa Ali <asfa.iisc.gmail.com> wrote:
>
> > Sir,
> >
> > When I did the simulations with:
> > tleap -s -f leaprc.ff99bsc0
> > loadoff RNA_CI.lib
> > source leaprc.gaff
> > ...
> > I did not notice any perturbation in the RNA structure. So is it
> necessary
> > to repeat the calculations using ff14SB?
> >
>
> Well if any of the people that have responded to this thread already were
> to review your paper, I think they made it pretty clear that they would
> reject work that uses ff99bsc0 for RNA rather than some of the much better,
> newer force fields.
>
> All the best,
> Jason
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
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>
--
Asfa Ali
Prof. S. Bhattacharya's group,
Dept. of Organic Chemistry,
Indian Institute of Science,
Bangalore-12
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Received on Sat Oct 25 2014 - 04:30:04 PDT
