[AMBER] peptideligandParameters

From: zayan alhalabi <zayan82at.hotmail.com>
Date: Thu, 23 Oct 2014 08:58:08 +0000

 I would like to ask you about the parameters for
peptide ,my peptide has a small modification :3,3-dimethyle-succinyle-lysine peptide and also it has benzoyl chemical group in the c- terminal ... how can I generate the parameters for this peptide befor doing MD with the protein. and when I tried to generate parameters in antechamber and then x-leap , the x-leap always give me wrong charges and missing parameters for many atoms .
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Received on Thu Oct 23 2014 - 02:00:02 PDT
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