Here is some (subjective) overview of current nucleic
acids force fields.
Molecular Dynamics Simulations of Nucleic Acids. From Tetranucleotides to
the Ribosome. Journal of Physical Chemistry Letters, 5, 2014, 1771-1782.
some example what happens with unbal. versions for RNA:
Molecular mechanism of preQ 1 riboswitch action: A molecular dynamics
study. Journal of Physical Chemistry B, 116, 2012, 12721-12734.
Jiri
On Thu, 23 Oct 2014, Asfa Ali wrote:
> Date: Thu, 23 Oct 2014 11:22:47 +0530
> From: Asfa Ali <asfa.iisc.gmail.com>
> Reply-To: AMBER Mailing List <amber.ambermd.org>
> To: AMBER Mailing List <amber.ambermd.org>
> Subject: [AMBER] Forcefield for RNA
>
> Hi all,
>
> I wanted to know whether the forcefield ff99bsc0 suitable for RNA
> simulations? Or is ff99SB better?
>
> Thanks in advance
>
> --
> Asfa Ali
> Prof. S. Bhattacharya's group,
> Dept. of Organic Chemistry,
> Indian Institute of Science,
> Bangalore-12
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Oct 23 2014 - 01:30:02 PDT
