Re: [AMBER] error ambpdb - Old style inpcrd file read

From: Urszula Uciechowska <>
Date: Wed, 20 Aug 2014 16:20:42 +0200

Dear Jason,
Please download the file which contains prod.prmtop and
prod.rst from:

Using those files I tried to run ambpdb command. I have also tried to use
prod.rst file for the next production run.

Urszula Uciechowska

> On Wed, Aug 20, 2014 at 8:15 AM, Urszula Uciechowska <
>> wrote:
>> For ambpdb command I used *rst for vmd visualisation I loaded mdcrd.
>> In my opinion the rst file is ok but somehow I am not able to use it to
>> run next production run. How to fix this problem?
> ​These are two separate issues (and the mdcrd visualization issue looks
> like a problem confusing Amber Coordinates and Amber Coordinates with
> Box).
> By rolling both questions into a single thread you increase confusion
> over
> what it is you're actually doing.
> Can I send somehow my rst and prmtop file?
> ​If they are small enough to attach here, go ahead (you may need to
> compress them). Otherwise, put them on some kind of file sharing site
> (like dropbox) and email the link here.
> ​
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
> _______________________________________________
> AMBER mailing list

Ta wiadomość została wysłana z serwera Uniwersytetu Gdańskiego

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Received on Wed Aug 20 2014 - 07:30:03 PDT
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