Dear Jason,
Please download the ambpdbERROR.zip file which contains prod.prmtop and
prod.rst from:
https://www.sendspace.com/file/54qe5b
Using those files I tried to run ambpdb command. I have also tried to use
prod.rst file for the next production run.
Urszula Uciechowska
> On Wed, Aug 20, 2014 at 8:15 AM, Urszula Uciechowska <
> urszula.uciechowska.biotech.ug.edu.pl> wrote:
>
>>
>> For ambpdb command I used *rst for vmd visualisation I loaded mdcrd.
>> In my opinion the rst file is ok but somehow I am not able to use it to
>> run next production run. How to fix this problem?
>>
>
> These are two separate issues (and the mdcrd visualization issue looks
> like a problem confusing Amber Coordinates and Amber Coordinates with
> Box).
> By rolling both questions into a single thread you increase confusion
> over
> what it is you're actually doing.
>
> Can I send somehow my rst and prmtop file?
>>
>
> If they are small enough to attach here, go ahead (you may need to
> compress them). Otherwise, put them on some kind of file sharing site
> (like dropbox) and email the link here.
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
-----------------------------------------
Ta wiadomość została wysłana z serwera Uniwersytetu Gdańskiego
http://www.ug.edu.pl/
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Aug 20 2014 - 07:30:03 PDT
