Re: [AMBER] error ambpdb - Old style inpcrd file read

From: Jason Swails <>
Date: Wed, 20 Aug 2014 08:33:22 -0400

On Wed, Aug 20, 2014 at 8:15 AM, Urszula Uciechowska <> wrote:

> For ambpdb command I used *rst for vmd visualisation I loaded mdcrd.
> In my opinion the rst file is ok but somehow I am not able to use it to
> run next production run. How to fix this problem?

​These are two separate issues (and the mdcrd visualization issue looks
like a problem confusing Amber Coordinates and Amber Coordinates with Box).
 By rolling both questions into a single thread you increase confusion over
what it is you're actually doing.

Can I send somehow my rst and prmtop file?

​If they are small enough to attach here, go ahead (you may need to
compress them). Otherwise, put them on some kind of file sharing site
(like dropbox) and email the link here.

Jason M. Swails
Rutgers University
Postdoctoral Researcher
AMBER mailing list
Received on Wed Aug 20 2014 - 06:00:03 PDT
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