On Mon, Aug 11, 2014, Andy Tsai wrote:
>
> Platform: MacOS 10.9 Mavericks on a Macbook Pro
>
> I have been using AmberTools 14 for the past month fine. Today when I
> attempted to use antechamber I got the following error:
>
> \ek\e\[dhcp-v031-230 : 002.ante.tleap] andytsai 3.2$ antechamber -i gaurav.mol2 -fi mol2 -o gaurav.ante.pdb -fo pdb
> Cannot open file CORR_NAME_TYPE.DAT, exit
This sounds like your $AMBERHOME variable is not correctly set. What do
you get by typing
echo $AMBERHOME
or by typing:
ls -l $AMBERHOME/dat/antechamber/CORR_NAME_TYPE.DAT
> I tried to permissions,
>
> \ek\e\[dhcp-v031-230 : ~] andytsai 3.2$ sudo chmod -R 777 ~/amber14
This is a bad thing to do: first, by using sudo in a potentially (very)
dangerous way; second, because it it highly unlikely that permissions
are the problem. See if you have a file called CORR_NAME_TYPE.DAT in
~/amber14/dat/antechamber. If not, there was a problem with installation,
although then the test cases would have failed, and you would have known
somwthing was wrong.
....dac
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Received on Mon Aug 11 2014 - 18:00:04 PDT
