Re: [AMBER] Constant surface tension on the membrane

From: Benjamin D Madej <bmadej.ucsd.edu>
Date: Mon, 9 Jun 2014 18:53:29 +0000

Hi James,

For the full story, I'd take a look at the GAFFlipid, Lipid11, and Lipid14 papers. Lipid14 is a lipid force field for tensionless bilayer simulations.

In case you're looking for those references here they are:
http://dx.doi.org/10.1021/ct4010307
http://dx.doi.org/10.1021/jp3059992
http://dx.doi.org/10.1039/C2SM26007G

All the best,
Ben Madej
UCSD Chemistry and Biochemistry
SDSC

________________________________________
From: Jason Swails [jason.swails.gmail.com]
Sent: Friday, June 06, 2014 5:27 AM
To: AMBER Mailing List
Subject: Re: [AMBER] Constant surface tension on the membrane

On Fri, Jun 6, 2014 at 4:28 AM, James Starlight <jmsstarlight.gmail.com>
wrote:

> Dear Amber users!
>
> Occasionally I heard something about constant surface tension concept
> applied to the Ambers membrane simulation. Does the CST is applied during
> the membrane simulations (for instance using anisotropic scaling) or just
> have been applied for the parametrization of the lipids in lipid11 ff?
>

‚ÄčLipid 11. The Amber 14 manual discusses the various lipid force fields in
chapter 3 section 8.

The lipid 11 and lipid 14 papers are also good references (citations
provided in the manual).
‚Äč
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Mon Jun 09 2014 - 12:00:02 PDT
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