Re: [AMBER] modified residues

From: David A Case <case.biomaps.rutgers.edu>
Date: Thu, 24 Apr 2014 07:56:05 -0400

On Thu, Apr 24, 2014, Lara rajam wrote:
>
> I would like to know if P-ser , S-Tyr , P-Tyr are already deposited in the
> database

Phospho-serine and phospho-tyrosine are part of the standard Amber libraries:
see the comments at the top of $AMBERHOME/dat/leap/cmd/leaprc.phosaa10 for
information and literature citations to how these were developed.

Many other modified amino-acids are available in Forcefield-PTM: see the link
on the Amber home page.

....dac


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Received on Thu Apr 24 2014 - 05:00:05 PDT
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