Hi,
I am trying to install AmberTools13 on a Fedora20 system. However, I got some fftw related error messages, even if use './configure -nofftw3'
sudo yum install libXt-devel libXext-devel libX11-devel libICE-devel libSM-devel gcc flex tcsh zlib-devel bzip2-devel libXt-devel libXext-devel libXdmcp-devel
export AMBERHOME to current directory
./configure
make install
...
make[5]: *** [fftw3.info] Error 1
make[5]: Leaving directory `/home/Programme/AmberTools13/amber12/AmberTools/src/fftw-3.3/doc'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `/home/Programme/AmberTools13/amber12/AmberTools/src/fftw-3.3/doc'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/home/Programme/AmberTools13/amber12/AmberTools/src/fftw-3.3'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/home/Programme/AmberTools13/amber12/AmberTools/src/fftw-3.3'
make[1]: *** [/home/swacker/Programme/AmberTools13/amber12//lib/libfftw3.a] Error 2
make[1]: Leaving directory `/home/Programme/AmberTools13/amber12/AmberTools/src'
make: *** [install] Error 2
>uname -a
Linux uofc 3.13.9-200.fc20.x86_64 #1 SMP Fri Apr 4 12:13:05 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux
>gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-isl=/builddir/build/BUILD/gcc-4.8.2-20131212/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.2-20131212/obj-x86_64-redhat-linux/cloog-install --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.8.2 20131212 (Red Hat 4.8.2-7) (GCC)
>gfortran -v
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-isl=/builddir/build/BUILD/gcc-4.8.2-20131212/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.2-20131212/obj-x86_64-redhat-linux/cloog-install --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.8.2 20131212 (Red Hat 4.8.2-7) (GCC)
--
Dr. Soeren Wacker
Centre For Molecular Simulation, BI # 547
The University of Calgary
2500 University Drive (NW)
Calgary, Alberta
Canada, T2N 1N4
Tel.: ++1 (403) 210 7860
Email: swacker.ucalgary.ca
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Received on Wed Apr 23 2014 - 14:30:02 PDT
