> On Apr 23, 2014, at 4:51 PM, Soren Wacker <swacker.ucalgary.ca> wrote:
>
> Hi,
>
> I am trying to install AmberTools13 on a Fedora20 system. However, I got some fftw related error messages, even if use './configure -nofftw3'
>
>
>
> sudo yum install libXt-devel libXext-devel libX11-devel libICE-devel libSM-devel gcc flex tcsh zlib-devel bzip2-devel libXt-devel libXext-devel libXdmcp-devel
>
> export AMBERHOME to current directory
>
> ./configure
> make install
>
> ...
> make[5]: *** [fftw3.info] Error 1
> make[5]: Leaving directory `/home/Programme/AmberTools13/amber12/AmberTools/src/fftw-3.3/doc'
> make[4]: *** [all-recursive] Error 1
> make[4]: Leaving directory `/home/Programme/AmberTools13/amber12/AmberTools/src/fftw-3.3/doc'
> make[3]: *** [all-recursive] Error 1
> make[3]: Leaving directory `/home/Programme/AmberTools13/amber12/AmberTools/src/fftw-3.3'
> make[2]: *** [all] Error 2
> make[2]: Leaving directory `/home/Programme/AmberTools13/amber12/AmberTools/src/fftw-3.3'
> make[1]: *** [/home/swacker/Programme/AmberTools13/amber12//lib/libfftw3.a] Error 2
> make[1]: Leaving directory `/home/Programme/AmberTools13/amber12/AmberTools/src'
> make: *** [install] Error 2
You didn't paste the actual error message here, just the message that there was an error. We need the error message from the compile step (not the reports from make that an error occurred).
That said, while AmberTools 14 probably will have the same error, I suggest upgrading to that version instead since it's likely to receive better support.
All the best,
Jason
>
>> uname -a
> Linux uofc 3.13.9-200.fc20.x86_64 #1 SMP Fri Apr 4 12:13:05 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux
>
>> gcc -v
> Using built-in specs.
> COLLECT_GCC=gcc
> COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/lto-wrapper
> Target: x86_64-redhat-linux
> Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-isl=/builddir/build/BUILD/gcc-4.8.2-20131212/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.2-20131212/obj-x86_64-redhat-linux/cloog-install --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
> Thread model: posix
> gcc version 4.8.2 20131212 (Red Hat 4.8.2-7) (GCC)
>
>> gfortran -v
> Using built-in specs.
> COLLECT_GCC=gfortran
> COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/lto-wrapper
> Target: x86_64-redhat-linux
> Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-isl=/builddir/build/BUILD/gcc-4.8.2-20131212/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.2-20131212/obj-x86_64-redhat-linux/cloog-install --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
> Thread model: posix
> gcc version 4.8.2 20131212 (Red Hat 4.8.2-7) (GCC)
>
>
>
> --
> Dr. Soeren Wacker
> Centre For Molecular Simulation, BI # 547
> The University of Calgary
> 2500 University Drive (NW)
> Calgary, Alberta
> Canada, T2N 1N4
>
> Tel.: ++1 (403) 210 7860
> Email: swacker.ucalgary.ca
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Wed Apr 23 2014 - 15:00:03 PDT
