Dear all,
I tried to compile AMBER12 pmemd.cuda on my computer running on Ubuntu 13.10 (with CUDA 5.5.22 and Nvidia driver 331.49).
The compilation started normally, but towards the end I got the following error messages:
home/rojw/amber12/lib/libnetcdf.a
/usr/bin/ld: ./cuda/cuda.a(gpu.o): undefined reference to symbol '_Znam..GLIBCXX_3.4'
/usr/lib/x86_64-linux-gnu/libstdc++.so.6: error adding symbols: DSO missing from command line
collect2: error: ld returned 1 exit status
make[3]: *** [pmemd.cuda] Error 1
make[3]: Leaving directory `/home/rojw/amber12/src/pmemd/src'
make[2]: *** [cuda] Error 2
make[2]: Leaving directory `/home/rojw/amber12/src/pmemd'
make[1]: *** [cuda] Error 2
make[1]: Leaving directory `/home/rojw/amber12/src'
make: *** [install] Error 2
I tried adding the flag'-lstdc++' to the PMEMD_LD variable in the config.h file, but that did not solve the problem. Any suggestions how to fix this problem?
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Received on Thu Mar 20 2014 - 01:00:03 PDT
