Dear List,
I am using following cpptraj script:
trajin X.mdcrd
trajin Y.mdcrd
strip :WAT
strip :Na+
trajout prod.crd (or trajout prod.netcdf netcdf)
The final trajectory in .netcdf format can be visualized properly in UCSF
Chimera orVMD but the trajectory prod.crd shows strange bonds upon
visualization. If I use *trajout prod.crd nobox*, there are no issues with
visualization.
Am I missing out something? Is there alternative method to output the
trajectory in .crd format?
Many thanks,
Neha
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Received on Thu Mar 20 2014 - 02:00:03 PDT
