[AMBER] about protonation state check.

From: setyanto md <stwahyudi.md.gmail.com>
Date: Tue, 11 Feb 2014 19:15:55 +0700

Dear All, amber user adn developer.

If I have protein without metal, and I like to simulate in various
temperature, 300K, 400K and 500K, then should I check the protonation state
of mya charged residue first ? by using PROPKA or H++ webservice ?

is tleap also detect a false protonation state of charged residue ?

Thank you.

best regards,

Setyanto tri wahyudi
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Received on Tue Feb 11 2014 - 04:30:02 PST
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