Re: [AMBER] Questions about pmemd.cuda and prmtop file with modified A COEF.

From: case <case.biomaps.rutgers.edu>
Date: Wed, 13 Nov 2013 03:40:45 -0500

On Tue, Nov 12, 2013, X Sun wrote:
>
> Thank you for your reply. I did use changeLJpair command in ParmED.py. I
> just tried pmemd.MPI, it's almost twice fast than sander.MPI. I tried
> to find the difference between pmemd and sander of Amber12 on the
> internet. But I didn't find a clue. Could you show me where can I find
> some information about their differences?

Please see the chapter on "pmemd" in the Amber12 Manual.

...dac


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Received on Wed Nov 13 2013 - 01:00:02 PST
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