Re: [AMBER] dna with different base pairs/turn

From: David A Case <>
Date: Mon, 11 Nov 2013 09:23:36 -0500

On Sun, Nov 10, 2013, Jio M wrote:
> I want to generate a BDNA with 10.5 bp/turn against 10bp/turn (bdna
> in NAB). I checked online few websites to build such DNA but it needs
> other parameters as well to customize own DNA (rise,tilt,twist, and many
> more).
> Anyone has better idea to generate 10.5 bp/turn DNA?

In addition to the response already posted, you could look at Section 15.12
of the AmberTools Manual "Creating Watson-Crick Duplexes". The wc_helix()
routine allows the user to input the desired twist.


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Received on Mon Nov 11 2013 - 06:30:03 PST
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