On Sun, Nov 10, 2013, Jio M wrote:
>
> I want to generate a BDNA with 10.5 bp/turn against 10bp/turn (bdna
> in NAB). I checked online few websites to build such DNA but it needs
> other parameters as well to customize own DNA (rise,tilt,twist, and many
> more).
> Anyone has better idea to generate 10.5 bp/turn DNA?
In addition to the response already posted, you could look at Section 15.12
of the AmberTools Manual "Creating Watson-Crick Duplexes". The wc_helix()
routine allows the user to input the desired twist.
...dac
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Received on Mon Nov 11 2013 - 06:30:03 PST
