On Wed, Nov 6, 2013 at 1:35 PM, David A Case <case.biomaps.rutgers.edu>wrote:
> On Wed, Nov 06, 2013, maghtar wrote:
>
> >> Does anyone know a tool to analyze the nmode() output (vecs) and
> visualize
> >> the modes?
> >> By searching in mailing list I found only tools which are based on older
> >> versions of amber.
>
> > I'll collect answers you get and put them on the web site. But note
> that the
> > format of the Amber vecs file has not ever changed, so which version of
> Amber
> > should not be relevant.
>
It seems nomde() has been under ptraj before but it is through NAB now. I
am not sure if the ouputs are same.
So far I have only found this software:
http://structbio.vanderbilt.edu/archives/amber-archive/2004/1805.php
but I have difficulties to install it.
meisam
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Received on Thu Nov 07 2013 - 02:30:04 PST
