Re: [AMBER] Sander error

From: Concha, Monica <Monica.Concha.ARS.USDA.GOV>
Date: Tue, 29 Oct 2013 20:39:09 +0000

Jason M. Swails,
Thank you for your quick answer!
How do I accomplish that?
Thanks again!

Monica C. Concha
Physical Science Technician
Cotton Structure and Quality Research
Southern Regional Research Center
1100 Robert E. Lee Blvd.
New Orleans, LA 70124
phone: 504-286-4252

-----Original Message-----
From: Jason Swails []
Sent: Tuesday, October 29, 2013 3:20 PM
To: AMBER Mailing List
Subject: Re: [AMBER] Sander error

On Tue, Oct 29, 2013 at 4:09 PM, Concha, Monica

> Hi,
> I recently installed AmberTools13 for the first time. However,
> when I try to run sander I find that it is not in the amber12/bin
> folder and I get the error message that amber12/bin/sander does not
> exist. Does anyone know what am I doing wrong?

sander is part of Amber 12. If you do not have an Amber 12 license then sander 12 will not be built.

As you mentioned, you do have Amber 10, so you will need to use sander from /home/glenn/amber10_distribution/amber10/bin instead.


Jason M. Swails
Rutgers University
Postdoctoral Researcher
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