[AMBER] Sander error

From: Concha, Monica <Monica.Concha.ARS.USDA.GOV>
Date: Tue, 29 Oct 2013 20:09:24 +0000


        I recently installed AmberTools13 for the first time. However, when I try to
run sander I find that it is not in the amber12/bin folder and I get the
error message that amber12/bin/sander does not exist. Does anyone know what am I doing wrong?

error message when I run sander:
$AMBERHOME/bin/sander -O -i polyAT_vac.in -o polyAT_vac.out -c polyAT_vac.inpcrd -p polyAT_vac.prmtop -r polyAT_vac.rst
-bash: /home/mconcha/amber12/bin/sander: No such file or directory

This is how I set my environment:
export AMBERHOME=/home/mconcha/amber12
export PATH=$PATH:/home/mconcha/amber12/bin:/home/glenn/amber10_distribution/amber10/bin

AmberTools 13 is in /home/mconcha/amber12/ambertools13
Amber10 is in /home/glenn/amber10_distribution/amber10


Monica C. Concha
Physical Science Technician
Cotton Structure and Quality Research
Southern Regional Research Center
1100 Robert E. Lee Blvd.
New Orleans, LA 70124
phone: 504-286-4252

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Received on Tue Oct 29 2013 - 13:30:03 PDT
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