Hi,
I recently installed AmberTools13 for the first time. However, when I try to
run sander I find that it is not in the amber12/bin folder and I get the
error message that amber12/bin/sander does not exist. Does anyone know what am I doing wrong?
error message when I run sander:
$AMBERHOME/bin/sander -O -i polyAT_vac.in -o polyAT_vac.out -c polyAT_vac.inpcrd -p polyAT_vac.prmtop -r polyAT_vac.rst
-bash: /home/mconcha/amber12/bin/sander: No such file or directory
This is how I set my environment:
export AMBERHOME=/home/mconcha/amber12
export PATH=$PATH:/home/mconcha/amber12/bin:/home/glenn/amber10_distribution/amber10/bin
AmberTools 13 is in /home/mconcha/amber12/ambertools13
Amber10 is in /home/glenn/amber10_distribution/amber10
Thanks,
Monica C. Concha
Physical Science Technician
Cotton Structure and Quality Research
Southern Regional Research Center
1100 Robert E. Lee Blvd.
New Orleans, LA 70124
monica.concha.ars.usda.gov
phone: 504-286-4252
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Received on Tue Oct 29 2013 - 13:30:03 PDT
