HI Jan-Philip,
Sorry ... A rather stupid question but I am not that good with python ..
How do I get the entire python traceback ?
Best
Vlad
On 10/24/2013 07:30 PM, Jan-Philip Gehrcke wrote:
> Showing the entire Python Traceback might help tremendously here!
>
> On 24.10.2013 19:20, Vlad Cojocaru wrote:
>> Re-installation does not solve the issue ...
>>
>> Best
>> Vlad
>>
>>
>> On 10/24/2013 07:15 PM, Vlad Cojocaru wrote:
>>> These are the 2 lines output by "grep has_key
>>> $AMBERHOME/bin/ParmedTools/ParmedActions.py " ..
>>>
>>> if arg_list.has_key('netcdf'):
>>> if arg_list.has_key('netcdf'):
>>>
>>> I will try reinstalling...
>>>
>>> Best
>>> Vlad
>>>
>>> On 10/24/2013 07:09 PM, Jason Swails wrote:
>>>> On Thu, Oct 24, 2013 at 12:31 PM, Vlad Cojocaru <
>>>> vlad.cojocaru.mpi-muenster.mpg.de> wrote:
>>>>
>>>>> I tested it and "outparm" produces exactly the same error.
>>>>>
>>>> This must be due to the fact that ArgumentList is actually being pulled
>>>> from somewhere else. You can look at the source code, has_key() is
>>>> definitely a defined attribute of ArgumentList, and all of the ParmEd tests
>>>> must fail when parmout and outparm do not work. It is impossible for this
>>>> error to occur when the correct ArgumentList is being imported into ParmEd,
>>>> so either there is an old ParmedTools package somewhere that is in
>>>> PYTHONPATH or ParmedTools somehow got corrupted in your $AMBERHOME/bin
>>>> directory. What does the command:
>>>>
>>>> grep has_key $AMBERHOME/bin/ParmedTools/ParmedActions.py
>>>>
>>>> return? Does it appear to be present?
>>>>
>>>> You can try to re-install ParmEd and see if that fixes things.
>>>>
>>>> cd $AMBERHOME/AmberTools/src/parmed
>>>> make uninstall
>>>> make install
>>>>
>>>> Good luck,
>>>> Jason
>>>>
>
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--
Dr. Vlad Cojocaru
Max Planck Institute for Molecular Biomedicine
Department of Cell and Developmental Biology
Röntgenstrasse 20, 48149 Münster, Germany
Tel: +49-251-70365-324; Fax: +49-251-70365-399
Email: vlad.cojocaru[at]mpi-muenster.mpg.de
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Received on Thu Oct 24 2013 - 11:00:04 PDT
