Showing the entire Python Traceback might help tremendously here!
On 24.10.2013 19:20, Vlad Cojocaru wrote:
> Re-installation does not solve the issue ...
>
> Best
> Vlad
>
>
> On 10/24/2013 07:15 PM, Vlad Cojocaru wrote:
>> These are the 2 lines output by "grep has_key
>> $AMBERHOME/bin/ParmedTools/ParmedActions.py " ..
>>
>> if arg_list.has_key('netcdf'):
>> if arg_list.has_key('netcdf'):
>>
>> I will try reinstalling...
>>
>> Best
>> Vlad
>>
>> On 10/24/2013 07:09 PM, Jason Swails wrote:
>>> On Thu, Oct 24, 2013 at 12:31 PM, Vlad Cojocaru <
>>> vlad.cojocaru.mpi-muenster.mpg.de> wrote:
>>>
>>>> I tested it and "outparm" produces exactly the same error.
>>>>
>>> This must be due to the fact that ArgumentList is actually being pulled
>>> from somewhere else. You can look at the source code, has_key() is
>>> definitely a defined attribute of ArgumentList, and all of the ParmEd tests
>>> must fail when parmout and outparm do not work. It is impossible for this
>>> error to occur when the correct ArgumentList is being imported into ParmEd,
>>> so either there is an old ParmedTools package somewhere that is in
>>> PYTHONPATH or ParmedTools somehow got corrupted in your $AMBERHOME/bin
>>> directory. What does the command:
>>>
>>> grep has_key $AMBERHOME/bin/ParmedTools/ParmedActions.py
>>>
>>> return? Does it appear to be present?
>>>
>>> You can try to re-install ParmEd and see if that fixes things.
>>>
>>> cd $AMBERHOME/AmberTools/src/parmed
>>> make uninstall
>>> make install
>>>
>>> Good luck,
>>> Jason
>>>
>
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Received on Thu Oct 24 2013 - 11:00:03 PDT
