Dear All,
I am trying to install MPI version of Amber12 and AmberTool13.
"./configure_openmpi gnu" and "./configure -mpi gnu" looked normally
finished. However, "make install" resulted error messages, part of which are
listed below.
I am using CentOS6.4, openmpi-1.7.2, and gnu compiler.
I would appreciate receiving proper advice to solve this problem.
1-13-27, Kasuga, Bunkyo-ku, Tokyo 112-8551
Department of Applied Chemistry, Chuo University
M. Chikira
****************************
logy.o: In function `GetPrmTop':
Topology.c:(.text+0x84d0): undefined reference to `ompi_mpi_comm_world'
Topology.c:(.text+0x84d7): undefined reference to `ompi_mpi_int'
Topology.c:(.text+0x8524): undefined reference to `ompi_mpi_char'
Trajectory.o: In function `WriteDiagnostics':
Trajectory.c:(.text+0x3219): undefined reference to `ompi_mpi_int'
Trajectory.c:(.text+0x3220): undefined reference to `ompi_mpi_op_max'
Trajectory.c:(.text+0x32c8): undefined reference to `ompi_mpi_op_min'
Trajectory.c:(.text+0x32d2): undefined reference to `ompi_mpi_int'
Trajectory.c:(.text+0x3370): undefined reference to `ompi_mpi_op_max'
Trajectory.c:(.text+0x337a): undefined reference to `ompi_mpi_int'
Trajectory.c:(.text+0x3420): undefined reference to `ompi_mpi_op_min'
Trajectory.c:(.text+0x342a): undefined reference to `ompi_mpi_int'
Thermostats.o: In function `KineticEnergyTI':
Thermostats.c:(.text+0xd8a): undefined reference to `ompi_mpi_op_sum'
Thermostats.c:(.text+0xd96): undefined reference to `ompi_mpi_double'
Thermostats.o: In function `KineticEnergy':
Thermostats.c:(.text+0xf4f): undefined reference to `ompi_mpi_op_sum'
Thermostats.c:(.text+0xf5b): undefined reference to `ompi_mpi_double'
Barostats.o: In function `MonteCarloBarostat':
Barostats.c:(.text+0x166d): undefined reference to `ompi_mpi_double'
Integrator.o: In function `RemoveMomentumTI':
Integrator.c:(.text+0xd25): undefined reference to `ompi_mpi_op_su
===========================================
mdgx.c:(.text+0x159): undefined reference to `ompi_mpi_comm_world'
mdgx.c:(.text+0x160): undefined reference to `ompi_mpi_int'
mdgx.o: In function `main':
mdgx.c:(.text+0x2b0): undefined reference to `ompi_mpi_comm_world'
collect2: ld ended at status 1
make[2]: *** [/home/makoto/amber12/bin/mdgx.MPI] error 1
make[2]: get out of the directory `/home/makoto/amber12/AmberTools/src/mdgx'
make[1]: *** [parallel] error 2
make[1]: get out of the directory `/home/makoto/amber12/AmberTools/src'
make: *** [install] error 2
[makoto.lbcc5329 amber12]$ ^C
[makoto.lbcc5329 amber12]$
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Received on Sat Oct 05 2013 - 01:00:03 PDT
