On Mon, Sep 16, 2013 at 1:05 PM, sudipta <sudipta.mml.gmail.com> wrote:
> Another thing, the chamber generated .prmtop and .inpcrd files can't
> produce output with amber 9 sander.MPI. However, it is showing sander.MPI
> is running. That means chamber generated files cannot be used with amber 9.
> Is it true? Although, it is silly but I want to make sure that.
>
Correct. chamber was developed after Amber 9. If all you have is Amber 9,
you must use the Amber force field (together with NAMD if you wish) in
order to use MMPBSA.py.
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Mon Sep 16 2013 - 10:30:03 PDT
