Upgrade to AmberTools 13 with all of the updates. I believe this issue was previously reported and fixed in that version.
If not, please set debug_printlevel to 2 in the _MMPBSA_info file and run
MMPBSA.py -rewrite-output
So I can get a trace back with a location of the error.
(Note you can use the above command with AmberTools 13 to avoid recalculating the entropies).
Good luck,
Jason
On Aug 25, 2013, at 10:23 PM, Xioling Chuang <xioling_c.hotmail.com> wrote:
> Dear All,
>
> I am using AmberTools12 and Amber 12 to calculate nmode analysis. I got an error message as
>
> AttributeError: 'list' object has no attribute 'stdev'
> Error occured on rank 0.
> Exiting. All files have been retained.
>
> I have found the same error message in amber mailing list, but no answer. Could you please suggest me to solve this problem?
> Thank you very much in advance.
>
> Best,
> Xioling
>
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Received on Sun Aug 25 2013 - 21:00:02 PDT
