Hi Aditya,
Please see the following tutorial:
http://ambermd.org/tutorials/advanced/tutorial16/An_Amber_Lipid_Force_Field
_Tutorial.html
All the best
Ross
/\
\/
|\oss Walker
---------------------------------------------------------
| Associate Research Professor |
| San Diego Supercomputer Center |
| Adjunct Associate Professor |
| Dept. of Chemistry and Biochemistry |
| University of California San Diego |
| NVIDIA Fellow |
|
http://www.rosswalker.co.uk |
http://www.wmd-lab.org |
| Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
---------------------------------------------------------
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On 8/19/13 3:28 AM, "Aditya Padhi" <adi.uoh.gmail.com> wrote:
>Dear Amber Users,
> I want to study the mechanism of interaction of certain peptides
>that are known to interact with membranes such as DOPC, POPC and so on. I
>have two sets of peptides; out of which, one set of peptides are known to
>penetrate the membrane while the behavior of another set of peptides with
>the membrane is not known.
> It would be really helpful if you can suggest me an appropriate
>tutorial on these lines. The most common query I have is to how to place
>and allow a peptide to cross or interact with the membrane? Shall I use
>VMD
>or any other software for this?
> Please let me know your response.
>
>Thanking you,
>Regards
>Aditya.
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Received on Mon Aug 19 2013 - 09:00:02 PDT
