[AMBER] Suggestions for using "distance" in cpptraj

From: Hunter Brown <bassoongoon.earthlink.net>
Date: Thu, 8 Aug 2013 14:44:57 -0600 (GMT-06:00)

Hello, I am wanting to use cpptraj for some distance analysis (using the distance command). I want to see how far my ligand is from a specific residue. What is a good way for me to pick one residue, and to be certain that it is the residue I want? I know that amber numbers residues in numerical order.

Thanks in advance!
-Hunter

Hunter Brown
Bassoonist, Contrabassoonist, Composer, Chemical Engineering Major
University of New Mexico

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Received on Thu Aug 08 2013 - 14:00:07 PDT
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