Hi Kanin,
Correct, DMPC is not available in Lipid11 but will be available in Lipid12. We are currently doing the validation runs for Lipid12 and hope to have it released within the next few months.
Cheers,
Callum
________________________________________
From: amber-bounces.ambermd.org [amber-bounces.ambermd.org] on behalf of Kanin Wichapong [kanin.wichapong.gmail.com]
Sent: 06 June 2013 15:56
To: amber.ambermd.org
Subject: [AMBER] Lipid11 DMPC
Dear Amber Users,
I tried to prepare membrane proteins for running simulation using lipid11
force field. However, I found some problems during the preparation.
Charmmlipid2amber.x successfully converted DMPC lipid from charmm format to
AMBER format. However, during leap its seems that lipid11 cannot generate
parameters for lipid DMPC. I have looked in the Amber Manual and found that
at the moment lipid11 does not yet includes the parameters/force field for
lipid DMPC. Do I understand it correct? The parameters for DMPC will be
included in lipid12, right? And if so, when lipid12 is available?
Thank you in advance for any suggestions.
Best Regards,
Kanin Wichapong
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Received on Fri Jun 07 2013 - 02:30:03 PDT
