Hi,
On Thu, Jun 6, 2013 at 9:28 AM, Matthew Wampole
<Matthew.Wampole.jefferson.edu> wrote:
> bintraj.F90:(.text+0x332): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'
> bintraj.F90:(.text+0x35e): undefined reference to `__netcdf_MOD_nf90_sync'
> bintraj.F90:(.text+0x4ba): undefined reference to `__netcdf_MOD_nf90_put_var_1d_eightbytereal'
> bintraj.F90:(.text+0x4cf): undefined reference to `__netcdf_MOD_nf90_sync'
These errors make me think that for some reason the NetCDF install
process got messed up and the fortran 90 netcdf routines didn't make
it into the netcdf library. I would say first check out your
libnetcdf.a and make sure the nf90 symbols are in there:
nm $AMBERHOME/lib/libnetcdf.a | grep nf90
If nothing is output from this then for some reason the netcdf install
went wrong. I remember seeing this happen once on one of my machines a
while back but I couldn't track down why. I think the way I fixed it
was by going into the netcdf directory manually and doing a 'make
uninstall' or 'make distclean', then 'make install', e.g.
cd $AMBERHOME/AmberTools/src/netcdf/src
make uninstall
make install
If you still do not have nf90 symbols in your libnetcdf.a after this
then there may be a larger problem.
-Dan
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-9119 (Fax)
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jun 06 2013 - 14:30:13 PDT
