On Tue, May 07, 2013, Dipankar Roy wrote:
>
> ated a new atom named: HG1 within residue: .R<SER 420>
> Joining SER - ILE
> Created a new atom named: HN within residue: .R<ILE 421>
> Created a new atom named: HG11 within residue: .R<ILE 421>
> Created a new atom named: CD within residue: .R<ILE 421>
> Created a new atom named: HD1 within residue: .R<ILE 421>
> Created a new atom named: HD2 within residue: .R<ILE 421>
> Created a new atom named: HD3 within residue: .R<ILE 421>
You have CHARMM=like atom names, but Amber uses IUPAC (and PDB version 3)
names. Google on "convert charmm atom names to amber" for some tools that can
help with the conversion.
(I don't know why charmmlipid2amber.x is not doing this.)
...dac
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Received on Tue May 07 2013 - 16:00:03 PDT
