Hi Daniel,
I have attached configure log for serial and parallel versions. For
compilation log for cpptraj in serial version is also attached. Once again
I rechecked for compilation of cpptraj and again runs quite well for
parallel but not for serial.
On Sun, May 5, 2013 at 9:56 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> Hi,
>
> This is a very strange error. If configure goes well and libbz2 is
> found, that is not consistent with the error message:
>
> */usr/bin/ld: cannot find -lbz2*
>
> On Sun, May 5, 2013 at 10:07 AM, Kshatresh Dutta Dubey
> <kshatresh.gmail.com> wrote:
> > bzip2-devel is also installed. Even I had commented libbz2 in config.h
> for
> > cpptraj configuration but every time I am getting same error. However,
> this
>
> In order to manually disable bzip2 support, setting BZLIB in config.h
> to an empty string, i.e.
>
> BZLIB=
>
> is not enough. You have to also remove the reference to '-DHASBZ2'
> from the CFLAGS variable.
>
> > problem has been resolved using parallel version and cpptraj has been
> > installed but it is still showing error in serial version.
>
> So just to be clear, bzip2 support works with the OpenMP version but
> not the serial version? That doesn't make sense to me. Maybe send me
> off-list your config file and a compile log if you have it?
>
> -Dan
>
> --
> -------------------------
> Daniel R. Roe, PhD
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 201
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-9119 (Fax)
>
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--
With best regards
*******************************************************************************************************************
Kshatresh Dutta Dubey, PhD
Post Doctoral Fellow
Indian Institute of Technology Kanpur
Kanpur, India
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Received on Sun May 05 2013 - 11:30:04 PDT
