Hi,
I think I may know what's happening now. Try compiling the following
test C program using 'gcc test.c -lbz2':
#include <stdio.h>
#include "bzlib.h"
int main(int argc, char** argv)
{
BZFILE *infile;
FILE* fp;
int err;
if (argc < 2) return 0;
fp = fopen(argv[0], "r");
infile = BZ2_bzReadOpen( &err, fp, 1, 0, NULL, 0);
BZ2_bzReadClose(&err, infile);
fclose(fp);
return 0;
}
If you get the same error (/usr/bin/ld: cannot find -lbz2) then for
some reason your system has bzip2 header files but not the library
itself, indicating either you're still missing a bzip2 package or your
bzip2 development package is broken.
-Dan
On Sun, May 5, 2013 at 11:58 AM, Kshatresh Dutta Dubey
<kshatresh.gmail.com> wrote:
> Hi Daniel,
>
> I have attached configure log for serial and parallel versions. For
> compilation log for cpptraj in serial version is also attached. Once again
> I rechecked for compilation of cpptraj and again runs quite well for
> parallel but not for serial.
>
>
>
> On Sun, May 5, 2013 at 9:56 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
>
>> Hi,
>>
>> This is a very strange error. If configure goes well and libbz2 is
>> found, that is not consistent with the error message:
>>
>> */usr/bin/ld: cannot find -lbz2*
>>
>> On Sun, May 5, 2013 at 10:07 AM, Kshatresh Dutta Dubey
>> <kshatresh.gmail.com> wrote:
>> > bzip2-devel is also installed. Even I had commented libbz2 in config.h
>> for
>> > cpptraj configuration but every time I am getting same error. However,
>> this
>>
>> In order to manually disable bzip2 support, setting BZLIB in config.h
>> to an empty string, i.e.
>>
>> BZLIB=
>>
>> is not enough. You have to also remove the reference to '-DHASBZ2'
>> from the CFLAGS variable.
>>
>> > problem has been resolved using parallel version and cpptraj has been
>> > installed but it is still showing error in serial version.
>>
>> So just to be clear, bzip2 support works with the OpenMP version but
>> not the serial version? That doesn't make sense to me. Maybe send me
>> off-list your config file and a compile log if you have it?
>>
>> -Dan
>>
>> --
>> -------------------------
>> Daniel R. Roe, PhD
>> Department of Medicinal Chemistry
>> University of Utah
>> 30 South 2000 East, Room 201
>> Salt Lake City, UT 84112-5820
>> http://home.chpc.utah.edu/~cheatham/
>> (801) 587-9652
>> (801) 585-9119 (Fax)
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
>
> --
> With best regards
> *******************************************************************************************************************
> Kshatresh Dutta Dubey, PhD
> Post Doctoral Fellow
> Indian Institute of Technology Kanpur
> Kanpur, India
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-9119 (Fax)
_______________________________________________
AMBER mailing list
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http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon May 06 2013 - 08:00:04 PDT
