Well, OK, if I save the prmtop and inpcrd, the pdb file from the inpcrd had no TER in it. Sorry.
*******************************
Mohd Farid Ismail
Graduate Student
Dept. of Chemistry/Biochemistry
University of Oklahoma
Norman 73019
________________________________________
From: Ismail, Mohd F. [farid.ou.edu]
Sent: Wednesday, March 27, 2013 12:47 AM
To: amber.ambermd.org
Subject: [AMBER] Question about 'sequence' command
I've been playing with the sequence command. I don't understand a behavior of the command. Lets say I build my chain chain1 = sequence { unit1 unit2 unit2 unit2 unit2 unit3 }, and everything is properly defined so no warning. When I write to pdb with savepdb chain1.pdb, I get TER between residues. I don't expect this because I though TER between residues mean the residues are not connected. What am I doing wrong?
*******************************
Mohd Farid Ismail
Graduate Student
Dept. of Chemistry/Biochemistry
University of Oklahoma
Norman 73019
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Received on Tue Mar 26 2013 - 23:00:03 PDT
