[AMBER] Question about 'sequence' command

From: Ismail, Mohd F. <farid.ou.edu>
Date: Wed, 27 Mar 2013 05:47:34 +0000

I've been playing with the sequence command. I don't understand a behavior of the command. Lets say I build my chain chain1 = sequence { unit1 unit2 unit2 unit2 unit2 unit3 }, and everything is properly defined so no warning. When I write to pdb with savepdb chain1.pdb, I get TER between residues. I don't expect this because I though TER between residues mean the residues are not connected. What am I doing wrong?

*******************************
Mohd Farid Ismail
Graduate Student
Dept. of Chemistry/Biochemistry
University of Oklahoma
Norman 73019
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Received on Tue Mar 26 2013 - 23:00:02 PDT
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