Re: [AMBER] Building a new structure!

From: Lachele Foley <lf.list.gmail.com>
Date: Fri, 15 Feb 2013 10:11:41 -0500

Our glycoprotein builder currently only attaches glycans to the most
biologically relevant residues serine, threonine and asparagine. It
does not have the capability for attaching glycans to lysine.


On Wed, Jan 23, 2013 at 1:58 PM, David A Case <case.biomaps.rutgers.edu> wrote:
> On Wed, Jan 23, 2013, Ibrahim Said wrote:
>
>> Thank you! I am trying to simulate the Schiff base for my protein in which
>> lysine is binding the fructose molecule through a covalent bond NZ-C1 of
>> fructose.
>
> OK, this is a covalent connection. As I suggested before, go to the glycam
> builder and follow the links to "attach an oligosaccharide to a protein".
>
> ...good luck...dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber



--
:-) Lachele
Lachele Foley
CCRC/UGA
Athens, GA USA
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Feb 15 2013 - 07:30:02 PST
Custom Search