Dear Soumya,
Please take a look to the VoArea plug-in and see if it get your job done.
http://www2.fc.up.pt/PortoBioComp/Software/Volarea/Home.html
Best regards
Joćo Ribeiro
On Jan 29, 2013, at 2:29 PM, Soumya Lipsa Rath <soumyalipsabt.gmail.com> wrote:
> Dear Amber Users,
>
> I am working with a protein-ligand system and wanted to know is there a way
> to calculate the volume of the ligand binding pocket. Additionally, can we
> characterize the contribution of each residue towards the pocket volume (in
> percentage)?
>
> Thanks
>
> Soumya
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Received on Tue Jan 29 2013 - 08:00:02 PST
