[AMBER] Generating ".prmtop" and ".inpcrd" from a .pdb file

From: Jonathan Saboury <jsabou1.gmail.com>
Date: Sun, 27 Jan 2013 00:42:59 -0800

Hello, all I want to do is use this .pdb:
http://pastebin.com/iquutx4h

to make a ".prmtop" and ".inpcrd" file so I can input it into OpenMM.

I am an Intermediate C++ programmer but only know hwo to use windows. I am
using
the cygwin installation guide "http://ambermd.org/mswindows.html"

Here is the error I am getting.
http://pastebin.com/9XBk1BDD

Any idea what went wrong? I didn't update bc when I do I get this:
http://pastebin.com/z75UuTKE

Thanks!
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Received on Sun Jan 27 2013 - 01:00:02 PST