[AMBER] Dihedral energy for non-serial atoms

From: Negar Ashari Astani <negarastani.gmail.com>
Date: Mon, 21 Jan 2013 16:32:25 +0100

Hello,

I had a question on defining dihedral for 4 atoms that are neither in a
serial manner nor in an improper manner. There are several other atoms
between them. Assuming that I have defined new atom types for these atoms
not to confuse amber, does amber apply such dihedral energy?

Many thanks in advance,
Negar 

-- 
Negar Ashari Astani
PhD student
Laboratory of Computational Biochemistry and Chemistry (LCBC)
Swiss Federal Institute of Technology (EPFL)
BCH 4118 (Bat. BCH)
CH-1015 Lausanne
Phone: +41 (0)21 693 03 26
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Jan 21 2013 - 08:00:02 PST
Custom Search