Dear Amber Users
I built a protein-sugar complex. The lysine residue (NZ atom) is involved in the binding to sugar (C1 atom). I separated lysine-sugar residue to generate a library for this complex. I used R.E.D server to assign its charges and get a FUL.mol2 file. The problem is, I can do not no how can I parameterize the angle CT-N3-Cg, a bond between a GLYCAM_06h
atom type and an amber atom type. Please, can I get any suggestions.
john
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jan 16 2013 - 01:00:02 PST
