Custom Search
-- Miguel Architecture et Fonction des Macromolécules Biologiques (UMR7257) CNRS, Aix-Marseille Université Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France Tel: +33(0) 491 82 55 93 Fax: +33(0) 491 26 67 20 mailto:miguel.ortiz-lombardia.afmb.univ-mrs.fr http://www.afmb.univ-mrs.fr/Miguel-Ortiz-Lombardia El 04/12/12 19:59, Robert Konecny escribió: > Hi Miguel, > > I don't know if I can help you with this particular error - looks like this > is perhaps system dependent (the copy operation fails for some reason)? > > But related to iAPBS/Amber building - I'm in process of switching iAPBS to > using cmake and integrating it more tightly with APBS. This should simplify > iAPBS/Amber compilation and installation significantly. This should be > finished soon and I'll update the installation instructions then too. > > Thanks, > > Robert > > On Tue, Dec 04, 2012 at 10:52:17AM +0100, Miguel Ortiz Lombardía wrote: >> Hi, >> >> Sorry for cross-list posting, I hope the topic is suitable for both >> lists. Apologies to those who get the message twice. >> >> I am trying to install the iAPBS interface as per Jason Swails' >> installation guidelines >> (http://jswails.wikidot.com/installing-amber12-and-ambertools-12#toc16) >> >> But, first, I downloaded the apbs sources with subversion: >> >> svn co https://apbs.svn.sourceforge.net/svnroot/apbs/trunk apbs >> >> as indicated in the iAPBS documentation: >> >> http://132.239.16.211/iapbs/doc/amber.html >> >> I did so because building iAPBS from the sources tarball in sourceforge >> (1.4.1, which BTW compile via cmake) using the directions from Jason or >> from the iAPBS documentation, fails. >> >> This is OSX with Snow Leopard Server (10.6.8) and GNU compilers. >> >> Then, after running on the subversion sources: >> >> ./configure CC=gcc-4.6 CXX=g++-4.6 F77=gfortran FC=gfortran >> CFLAGS="$CFLAGS -DVAPBSQUIET" --prefix=${APBS_PREFIX} >> --enable-abps-quiet --disable-openmp >> >> (note that --enable-abps-quiet has to be actually --enable-abps-quiet to >> be recognized, a typo in the configure file?) >> >> make >> >> finishes without error. But then, running 'make install' ends with: >> >> (...) >> creating build/bdist.macosx-10.6-universal/egg/EGG-INFO >> copying ZSI.egg-info/PKG-INFO -> >> build/bdist.macosx-10.6-universal/egg/EGG-INFO >> copying ZSI.egg-info/SOURCES.txt -> >> build/bdist.macosx-10.6-universal/egg/EGG-INFO >> copying ZSI.egg-info/dependency_links.txt -> >> build/bdist.macosx-10.6-universal/egg/EGG-INFO >> copying ZSI.egg-info/entry_points.txt -> >> build/bdist.macosx-10.6-universal/egg/EGG-INFO >> copying ZSI.egg-info/top_level.txt -> >> build/bdist.macosx-10.6-universal/egg/EGG-INFO >> zip_safe flag not set; analyzing archive contents... >> creating 'dist/ZSI-2.1_a1-py2.6.egg' and adding >> 'build/bdist.macosx-10.6-universal/egg' to it >> removing 'build/bdist.macosx-10.6-universal/egg' (and everything under it) >> Processing ZSI-2.1_a1-py2.6.egg >> Removing /a/progs/simu/apbs/lib/python2.6/site-packages/ZSI-2.1_a1-py2.6.egg >> Copying ZSI-2.1_a1-py2.6.egg to >> /a/progs/simu/apbs/lib/python2.6/site-packages >> error: >> /a/progs/simu/apbs/lib/python2.6/site-packages/ZSI-2.1_a1-py2.6.egg: >> Operation not supported >> make[5]: *** [install-data-local] Error 1 >> make[4]: *** [install-am] Error 2 >> make[3]: *** [install-recursive] Error 1 >> make[2]: *** [install-recursive] Error 1 >> make[1]: *** [install-recursive] Error 1 >> make: *** [install-recursive] Error 1 >> >> I would appreciate any clues to get me past this error. >> >> Best regards, >> >> -- >> Miguel Ortiz Lombardía >> >> Architecture et Fonction des Macromolécules Biologiques (UMR7257) >> CNRS, Aix-Marseille Université >> Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France >> Tel: +33(0) 491 82 55 93 >> Fax: +33(0) 491 26 67 20 >> mailto:miguel.ortiz-lombardia.afmb.univ-mrs.fr >> http://www.afmb.univ-mrs.fr/Miguel-Ortiz-Lombardia >> >> ------------------------------------------------------------------------------ >> LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial >> Remotely access PCs and mobile devices and provide instant support >> Improve your efficiency, and focus on delivering more value-add services >> Discover what IT Professionals Know. Rescue delivers >> http://p.sf.net/sfu/logmein_12329d2d >> _______________________________________________ >> apbs-users mailing list >> apbs-users.lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/apbs-users > _______________________________________________ AMBER mailing list AMBER.ambermd.org http://lists.ambermd.org/mailman/listinfo/amberReceived on Wed Dec 05 2012 - 00:00:02 PST