Hi Miguel,
I don't know if I can help you with this particular error - looks like this
is perhaps system dependent (the copy operation fails for some reason)?
But related to iAPBS/Amber building - I'm in process of switching iAPBS to
using cmake and integrating it more tightly with APBS. This should simplify
iAPBS/Amber compilation and installation significantly. This should be
finished soon and I'll update the installation instructions then too.
Thanks,
Robert
On Tue, Dec 04, 2012 at 10:52:17AM +0100, Miguel Ortiz Lombardía wrote:
> Hi,
>
> Sorry for cross-list posting, I hope the topic is suitable for both
> lists. Apologies to those who get the message twice.
>
> I am trying to install the iAPBS interface as per Jason Swails'
> installation guidelines
> (http://jswails.wikidot.com/installing-amber12-and-ambertools-12#toc16)
>
> But, first, I downloaded the apbs sources with subversion:
>
> svn co https://apbs.svn.sourceforge.net/svnroot/apbs/trunk apbs
>
> as indicated in the iAPBS documentation:
>
> http://132.239.16.211/iapbs/doc/amber.html
>
> I did so because building iAPBS from the sources tarball in sourceforge
> (1.4.1, which BTW compile via cmake) using the directions from Jason or
> from the iAPBS documentation, fails.
>
> This is OSX with Snow Leopard Server (10.6.8) and GNU compilers.
>
> Then, after running on the subversion sources:
>
> ./configure CC=gcc-4.6 CXX=g++-4.6 F77=gfortran FC=gfortran
> CFLAGS="$CFLAGS -DVAPBSQUIET" --prefix=${APBS_PREFIX}
> --enable-abps-quiet --disable-openmp
>
> (note that --enable-abps-quiet has to be actually --enable-abps-quiet to
> be recognized, a typo in the configure file?)
>
> make
>
> finishes without error. But then, running 'make install' ends with:
>
> (...)
> creating build/bdist.macosx-10.6-universal/egg/EGG-INFO
> copying ZSI.egg-info/PKG-INFO ->
> build/bdist.macosx-10.6-universal/egg/EGG-INFO
> copying ZSI.egg-info/SOURCES.txt ->
> build/bdist.macosx-10.6-universal/egg/EGG-INFO
> copying ZSI.egg-info/dependency_links.txt ->
> build/bdist.macosx-10.6-universal/egg/EGG-INFO
> copying ZSI.egg-info/entry_points.txt ->
> build/bdist.macosx-10.6-universal/egg/EGG-INFO
> copying ZSI.egg-info/top_level.txt ->
> build/bdist.macosx-10.6-universal/egg/EGG-INFO
> zip_safe flag not set; analyzing archive contents...
> creating 'dist/ZSI-2.1_a1-py2.6.egg' and adding
> 'build/bdist.macosx-10.6-universal/egg' to it
> removing 'build/bdist.macosx-10.6-universal/egg' (and everything under it)
> Processing ZSI-2.1_a1-py2.6.egg
> Removing /a/progs/simu/apbs/lib/python2.6/site-packages/ZSI-2.1_a1-py2.6.egg
> Copying ZSI-2.1_a1-py2.6.egg to
> /a/progs/simu/apbs/lib/python2.6/site-packages
> error:
> /a/progs/simu/apbs/lib/python2.6/site-packages/ZSI-2.1_a1-py2.6.egg:
> Operation not supported
> make[5]: *** [install-data-local] Error 1
> make[4]: *** [install-am] Error 2
> make[3]: *** [install-recursive] Error 1
> make[2]: *** [install-recursive] Error 1
> make[1]: *** [install-recursive] Error 1
> make: *** [install-recursive] Error 1
>
> I would appreciate any clues to get me past this error.
>
> Best regards,
>
> --
> Miguel Ortiz Lombardía
>
> Architecture et Fonction des Macromolécules Biologiques (UMR7257)
> CNRS, Aix-Marseille Université
> Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France
> Tel: +33(0) 491 82 55 93
> Fax: +33(0) 491 26 67 20
> mailto:miguel.ortiz-lombardia.afmb.univ-mrs.fr
> http://www.afmb.univ-mrs.fr/Miguel-Ortiz-Lombardia
>
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Received on Tue Dec 04 2012 - 11:30:02 PST
