Re: [AMBER] RNA - build a mismatch and a loop with NAB

From: Jason Swails <>
Date: Wed, 24 Oct 2012 07:30:27 -0400

On Wed, Oct 24, 2012 at 5:58 AM, Amparo Garcia Lopez <> wrote:

> Thanks very much! I tried MC-Sym and it looks very promising. At least it
> kind of formed a loop and gave me 4 different possible pdb's, whereas
> Assemble or x3DNA would only give me one and leave the loop as an ugly
> overhang...
> I can't do programming yet, as I'm a complete beginner. So maybe trying to
> get this with Leap would not work in my hands..

Just to clarify, LEaP requires no programming. NAB is actually a
programming language based on C, so getting NAB to build your structure
would require programming.


Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
AMBER mailing list
Received on Wed Oct 24 2012 - 05:00:02 PDT
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