Re: [AMBER] RNA - build a mismatch and a loop with NAB

From: Jason Swails <jason.swails.gmail.com>
Date: Wed, 24 Oct 2012 07:30:27 -0400

On Wed, Oct 24, 2012 at 5:58 AM, Amparo Garcia Lopez <
Amparo.GarciaLopez.unige.ch> wrote:

> Thanks very much! I tried MC-Sym and it looks very promising. At least it
> kind of formed a loop and gave me 4 different possible pdb's, whereas
> Assemble or x3DNA would only give me one and leave the loop as an ugly
> overhang...
>
> I can't do programming yet, as I'm a complete beginner. So maybe trying to
> get this with Leap would not work in my hands..
>

Just to clarify, LEaP requires no programming. NAB is actually a
programming language based on C, so getting NAB to build your structure
would require programming.

HTH,
Jason

-- 
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Wed Oct 24 2012 - 05:00:02 PDT
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