Re: [AMBER] XLeap Install Issue

From: Bill Ross <ross.cgl.ucsf.EDU>
Date: Fri, 12 Oct 2012 18:58:41 -0700

For X on Win7, I run a virtual machine.

Bill

Mark Zottola <mzottola.gmail.com> wrote:

> Jason,
>
> I only installed through the Cygwin installer additional X11 packages which
> may have contained the header files I needed. Since they were still not in
> the place where the makefile expected them, I moved the header files from
> where they were to where they needed to be (actually a copy instead of a
> move).
>
> I guess I am sol as you are working on a virtual XP machine and I am on
> real Windows 7 box. Well I can only hope this resolves itself as I can
> appreciate the bane of being a graduate student.
>
> Thanks for taking time away from the research. I do know what that means
> and I am appreciative. I will muddle on and hope I can find solutions.
>
>
> Mark
>
> On Fri, Oct 12, 2012 at 7:47 PM, Jason Swails <jason.swails.gmail.com>wrote:
>
> > On Fri, Oct 12, 2012 at 7:32 PM, Mark Zottola <mzottola.gmail.com> wrote:
> >
> > > Jason,
> > >
> > > Thanks for your earlier clue on mtkpp. I do not anticipate needing to
> > > estimate metal parameters. No loss there.
> > >
> > > Now I now have an issue with building xleap. I have included below the
> > > error messages. As you can see, make is looking for shape.h. I did a
> > > global find and did not locate this file. A search of the
> > > Vanderbilt-hosted AMBER mail reflector archive said that shape.h should
> > be
> > > included in the X11. I downloaded some extra X11 packages which had
> > > shape.h and a few other necessary files, moved them to the extensions
> > > directory where the make file wanted them to be and reran the install.
> > >
> >
> > I'm confused about what you did here. Did run the Cygwin installer again
> > and select all of the X11 packages? Or did you literally just download
> > some X11 packages from some website and dump the header files into XHOME or
> > something?
> >
> > You should be installing all Amber-required packages through the Cygwin
> > installer. Do you have the 4 packages under X11 from my Wiki installed?
> > (libXt-devel, xinit, xorg-scripts, and xorg-server-devel?) It may be
> > worth checking this again and trying to install some additional X11
> > packages (especially if you can find out which ones contain your missing
> > header files).
> >
> > Unfortunately I have access only to a Windows XP virtual machine (grad
> > student == rather-limited-resources), with only finite time to make sure
> > everything continues to work amidst updates, so I can't guarantee my
> > tutorial will work completely for you...
> >
> > HTH,
> > Jason
> >
> > --
> > Jason M. Swails
> > Quantum Theory Project,
> > University of Florida
> > Ph.D. Candidate
> > 352-392-4032
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
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Received on Fri Oct 12 2012 - 19:00:05 PDT
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