Dear all,
I stripped the C-terminal of my protein from the trajectory by saying
"strip :61-93" with ptraj. However, the C-terminal is left as -CO, I
want to add an OXT so that it would be compatible with truncated
topology that I get with tleap.
I should either turn off atom addition in tleap or I should be able to
tell to add OXT in ptraj to make the truncated coordinates and topology
files compatible.
I appreciate any help on this matter,
Thanks!
Nihal Korkmaz
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Received on Thu Oct 11 2012 - 17:00:02 PDT
