Hi,
What version of AmberTools are you using, and what OS?
-Dan
On Monday, September 24, 2012, Zalikha Ibrahim wrote:
> Good day to all,
>
> I have two question,
>
> 1) I have a mdcrd file with the size almost 4 GB. I tried to proceed
> checking rmsd using ptraj, but it gave me warning 'could not open mdcrd
> file with mode (r)'. I searched in archive, and found that the problem
> might due to file permission. So I change the mode from rw-rw-r to
> rwxrwx--x, but still it didnt work. I would be grateful if anyone could
> help me how to solve this, so that I can proceed with analysis.
>
> 2) Can we process a crash mdcrd file? If it possible, does it require any
> manual modification before analysis?
>
> Thanks so much
>
> Zalikha Ibrahim
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--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 201
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-9119 (Fax)
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Received on Mon Sep 24 2012 - 20:00:02 PDT
